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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4yaw 2AM NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4yaw 2AMNADPH--cytochrome P450 reductase / 1.030
4yal 2AMNADPH--cytochrome P450 reductase / 1.023
4yaf 2AMNADPH--cytochrome P450 reductase / 1.022
4yau 2AMNADPH--cytochrome P450 reductase / 1.006
3qfs NAPNADPH--cytochrome P450 reductase / 1.003
3qft NAPNADPH--cytochrome P450 reductase / 1.003
3qe2 NAPNADPH--cytochrome P450 reductase / 0.998
1ja1 NAPNADPH--cytochrome P450 reductase / 0.987
4y7c NAPNADPH--cytochrome P450 reductase / 0.971
4y9u NAPNADPH--cytochrome P450 reductase / 0.969
3qfc NAPNADPH--cytochrome P450 reductase / 0.961
1ja0 NAPNADPH--cytochrome P450 reductase / 0.924
4y9r NAPNADPH--cytochrome P450 reductase / 0.916
3ojx NAPNADPH--cytochrome P450 reductase / 0.900
1f20 NAPNitric oxide synthase, brain 1.14.13.39 0.888
1amo NAPNADPH--cytochrome P450 reductase / 0.880
4yao 2AMNADPH--cytochrome P450 reductase / 0.875
3qfr NAPNADPH--cytochrome P450 reductase / 0.834
3zc3 NAPFerredoxin--NADP reductase 1.18.1.2 0.799
1tll NAPNitric oxide synthase, brain 1.14.13.39 0.781
2bf4 NAPNADPH--cytochrome P450 reductase / 0.774
2bpo NAPNADPH--cytochrome P450 reductase / 0.767
2bn4 NAPNADPH--cytochrome P450 reductase / 0.731
1fnd A2PFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.707
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.705
2rc6 NAPFerredoxin--NADP reductase / 0.700
1w87 NAPFerredoxin--NADP reductase 1.18.1.2 0.692
2ok7 A2PFerredoxin--NADP reductase, apicoplast / 0.676
3lzw NAPFerredoxin--NADP reductase 2 1.18.1.2 0.674
4dpy 2P0Mevalonate diphosphate decarboxylase / 0.671
2xau ADPPre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 3.6.4.13 0.664
3tn7 NJPShort-chain alcohol dehydrogenase / 0.661
3q5d GDPAtlastin-1 3.6.5 0.659
1mb4 NDPAspartate-semialdehyde dehydrogenase 1 / 0.658
1xmv ADPProtein RecA / 0.658
4koy CSCUncharacterized protein / 0.657
4dq1 UMPThymidylate synthase / 0.656
4du6 GTPGTP cyclohydrolase 1 / 0.656
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.656
2q0l NAPThioredoxin reductase 1.8.1.9 0.655
3l1c ADPProtein claret segregational / 0.655
3u9e COALmo1369 protein / 0.655
4cnz ADPNitrogen regulatory protein P-II 1 / 0.655
3mle ADPATP-dependent dethiobiotin synthetase BioD 6.3.3.3 0.654
5bn3 ADPV-type ATP synthase alpha chain / 0.654
5bn3 ADPNEQ263 / 0.654
3tif ADPUncharacterized ABC transporter ATP-binding protein MJ0796 / 0.652
3wcz NAPAldo-keto reductase AKR2E4 / 0.652
4obe GDPGTPase KRas / 0.652
1oaa NAPSepiapterin reductase 1.1.1.153 0.651
1q6n P90Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.651
3ea5 GDPGTP-binding nuclear protein Ran / 0.651
4ifb PPSBile salt sulfotransferase 2.8.2.14 0.650