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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4yau 2AM NADPH--cytochrome P450 reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4yau 2AMNADPH--cytochrome P450 reductase / 1.048
4yal 2AMNADPH--cytochrome P450 reductase / 1.038
4yaf 2AMNADPH--cytochrome P450 reductase / 1.035
3qft NAPNADPH--cytochrome P450 reductase / 1.018
3qfs NAPNADPH--cytochrome P450 reductase / 1.017
3qfc NAPNADPH--cytochrome P450 reductase / 1.011
4yaw 2AMNADPH--cytochrome P450 reductase / 1.006
4y7c NAPNADPH--cytochrome P450 reductase / 0.987
4y9u NAPNADPH--cytochrome P450 reductase / 0.985
3qe2 NAPNADPH--cytochrome P450 reductase / 0.978
1ja1 NAPNADPH--cytochrome P450 reductase / 0.970
4y9r NAPNADPH--cytochrome P450 reductase / 0.948
1ja0 NAPNADPH--cytochrome P450 reductase / 0.924
4yao 2AMNADPH--cytochrome P450 reductase / 0.913
3ojx NAPNADPH--cytochrome P450 reductase / 0.900
1amo NAPNADPH--cytochrome P450 reductase / 0.894
1f20 NAPNitric oxide synthase, brain 1.14.13.39 0.846
3qfr NAPNADPH--cytochrome P450 reductase / 0.824
1tll NAPNitric oxide synthase, brain 1.14.13.39 0.797
2bf4 NAPNADPH--cytochrome P450 reductase / 0.791
3zc3 NAPFerredoxin--NADP reductase 1.18.1.2 0.781
2bpo NAPNADPH--cytochrome P450 reductase / 0.747
1fnd A2PFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.741
2rc6 NAPFerredoxin--NADP reductase / 0.722
3ung ADPCRISPR system Cmr subunit Cmr2 / 0.703
2bn4 NAPNADPH--cytochrome P450 reductase / 0.699
1w87 NAPFerredoxin--NADP reductase 1.18.1.2 0.694
4dpy 2P0Mevalonate diphosphate decarboxylase / 0.671
3wcz NAPAldo-keto reductase AKR2E4 / 0.669
2gq3 COAMalate synthase G / 0.666
4kov KOVUncharacterized protein / 0.663
4kos 4KOUncharacterized protein / 0.662
4kox CLSUncharacterized protein / 0.662
2ydx NAPMethionine adenosyltransferase 2 subunit beta / 0.660
4koy CSCUncharacterized protein / 0.658
4ph9 IBPProstaglandin G/H synthase 2 1.14.99.1 0.658
4kow CFXUncharacterized protein / 0.657
1qip GNBLactoylglutathione lyase 4.4.1.5 0.654
3lzx NAPFerredoxin--NADP reductase 2 1.18.1.2 0.654
1yb5 NAPQuinone oxidoreductase 1.6.5.5 0.653
3ews ADPATP-dependent RNA helicase DDX19B 3.6.4.13 0.653
4nhm UN9Prolyl 3,4-dihydroxylase TPA1 1.14.11 0.653
1gjr NAPFerredoxin--NADP reductase 1.18.1.2 0.652
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.652
2w02 ATPAcsD / 0.652
3f03 FMNPentaerythritol tetranitrate reductase / 0.652