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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4xzj NAD Putative NAD(+)--arginine ADP-ribosyltransferase Vis 2.4.2.31

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4xzj NADPutative NAD(+)--arginine ADP-ribosyltransferase Vis 2.4.2.31 1.227
4h03 NADIota toxin component Ia / 0.751
4h0v NADIota toxin component Ia / 0.746
1gzf NADMono-ADP-ribosyltransferase C3 2.4.2 0.722
3b82 NADExotoxin A 2.4.2.36 0.693
2zit NADExotoxin A 2.4.2.36 0.690
4gte FADFlavin-dependent thymidylate synthase 2.1.1.148 0.686
3b8h NADExotoxin A 2.4.2.36 0.677
1og4 NAIT-cell ecto-ADP-ribosyltransferase 2 / 0.668
1giq NAIIota toxin component Ia / 0.666
1q6t 600Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 0.661
3q9o NADCholix toxin 2.4.2.36 0.661
2qrd ADP5'-AMP-activated protein kinase subunit gamma / 0.660
3b78 NADExotoxin A 2.4.2.36 0.660
4isu IKMGlutamate receptor 2 / 0.660