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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4xul GTP Uncharacterized protein mg662

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4xul GTPUncharacterized protein mg662 / 1.038
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.692
3hiy UTPUncharacterized protein / 0.675
1r8c UTPCCA-adding enzyme 2.7.7.72 0.670
4xj4 3ATCyclic GMP-AMP synthase / 0.666
3au2 DGTDNA polymerase beta family (X family) / 0.663
4dtx TTPDNA-directed DNA polymerase / 0.662
4m3x ATPDNA-directed DNA polymerase / 0.654
4k97 ATPCyclic GMP-AMP synthase / 0.650