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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4xjc TTP dCTP deaminase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4xjc TTPdCTP deaminase / 1.334
2v9x DUTdCTP deaminase / 1.001
4a6a TTPdCTP deaminase 3.5.4.13 0.925
2hxd DUPdCTP deaminase, dUMP-forming 3.5.4.30 0.910
1xs4 DCPdCTP deaminase / 0.868
2qxx TTPdCTP deaminase 3.5.4.13 0.823
4gv8 DUPDUTPase / 0.790
4wrk DUPDUTPase / 0.730
2we3 DUTDeoxyuridine 5'-triphosphate nucleotidohydrolase / 0.717
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.684
1qz5 ATPActin, alpha skeletal muscle / 0.674
2q36 ATPActin, alpha skeletal muscle / 0.673
4pkg ATPActin, alpha skeletal muscle / 0.673
1t44 ATPActin, alpha skeletal muscle / 0.671
2j4q TTPdCTP deaminase / 0.671
1h65 GDPTranslocase of chloroplast 34 3.6.5 0.668
2ol0 DUDDUTP pyrophosphatase / 0.663
2ido TMPDNA polymerase III subunit epsilon 2.7.7.7 0.662
1n75 ATPGlutamate--tRNA ligase 6.1.1.17 0.661
1ow3 GDPTransforming protein RhoA / 0.660
2wgh DTPRibonucleoside-diphosphate reductase large subunit 1.17.4.1 0.657
3rab GNPRas-related protein Rab-3A / 0.657
1cxz GSPTransforming protein RhoA / 0.656
2fah GDPPhosphoenolpyruvate carboxykinase [GTP], mitochondrial 4.1.1.32 0.655
3wt0 ATPCell division protein FtsA / 0.655
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.654
3mn6 ATPActin-5C / 0.654
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.654
1wua ATPActin, alpha skeletal muscle / 0.653
3mn9 ATPActin-5C / 0.652
1eqy ATPActin, alpha skeletal muscle / 0.650
3orl AGSSerine/threonine protein kinase / 0.650