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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4x2d ATP Fic family protein putative filamentation induced by cAMP protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4x2d ATPFic family protein putative filamentation induced by cAMP protein / 1.071
3zec ANPAdenosine monophosphate-protein transferase SoFic 2.7.7.n1 0.784
3zlm ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.740
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.739
4u0s ADPAdenosine monophosphate-protein transferase FICD 2.7.7.n1 0.727
3se5 ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.725
4u07 ATPAdenosine monophosphate-protein transferase FICD 2.7.7.n1 0.705
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.687
1f9a ATPNicotinamide-nucleotide adenylyltransferase / 0.677
1peq TTPRibonucleoside-diphosphate reductase 2 subunit alpha 1.17.4.1 0.676
2zev B71Geranylgeranyl pyrophosphate synthase / 0.670
4gdy 0X1Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.670
2cvv ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.669
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.669
3m0e ATPTranscriptional regulator (NtrC family) / 0.667
4u0z APCAdenosine monophosphate-protein transferase FICD 2.7.7.n1 0.664
2z4w 749Geranylgeranyl pyrophosphate synthase / 0.662
3tjl FMNNADPH dehydrogenase / 0.660
3tb9 ANPRibonucleoside-diphosphate reductase large chain 1 1.17.4.1 0.659
1h50 FMNPentaerythritol tetranitrate reductase / 0.658
1ytm ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.657
3c3x NAPEugenol synthase 1 1.1.1.318 0.657
3oee ANPATP synthase subunit alpha, mitochondrial / 0.656
3oee ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.656
2y6p CTP3-deoxy-manno-octulosonate cytidylyltransferase 2.7.7.38 0.655
2jiz ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.654
2dy9 ADPNucleoside diphosphate kinase 2.7.4.6 0.651
3u9e COALmo1369 protein / 0.651
4qm6 GTPMetallophosphoesterase / 0.651
1j3j NDPBifunctional dihydrofolate reductase-thymidylate synthase 1.5.1.3 0.650
4fda NAP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.650