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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4wxl BB2 Peptide deformylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4wxl BB2Peptide deformylase / 0.993
1ix1 BB2Peptide deformylase / 0.764
4e9b BB2Peptide deformylase / 0.751
3pn4 BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.722
3u04 BB2Peptide deformylase / 0.711
1s17 GNRPeptide deformylase / 0.675
4je7 BB2Peptide deformylase 1A, chloroplastic/mitochondrial 3.5.1.88 0.675
1g2a BB2Peptide deformylase 3.5.1.88 0.671
1lru BB2Peptide deformylase 3.5.1.88 0.667
1lqy BB2Peptide deformylase 2 3.5.1.88 0.660
1g27 BB1Peptide deformylase 3.5.1.88 0.654