1.950 Å
X-ray
2004-01-05
| Name: | Peptide deformylase |
|---|---|
| ID: | DEF_PSEAE |
| AC: | Q9I7A8 |
| Organism: | Pseudomonas aeruginosa |
| Reign: | Bacteria |
| TaxID: | 208964 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| B | 100 % |
| B-Factor: | 24.018 |
|---|---|
| Number of residues: | 25 |
| Including | |
| Standard Amino Acids: | 25 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 0.339 | 300.375 |
| % Hydrophobic | % Polar |
|---|---|
| 42.70 | 57.30 |
| According to VolSite | |

| HET Code: | GNR |
|---|---|
| Formula: | C10H10N2O3S |
| Molecular weight: | 238.263 g/mol |
| DrugBank ID: | DB02036 |
| Buried Surface Area: | 76.82 % |
| Polar Surface area: | 103.72 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 4 |
| H-Bond Donors: | 3 |
| Rings: | 2 |
| Aromatic rings: | 1 |
| Anionic atoms: | 0 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 0 |
| Rotatable Bonds: | 2 |
| X | Y | Z |
|---|---|---|
| 50.1659 | 86.7839 | 41.3995 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| OAM | N | ILE- 45 | 3.09 | 164.29 | H-Bond (Protein Donor) |
| CAC | CD1 | ILE- 45 | 3.89 | 0 | Hydrophobic |
| CAE | CD1 | ILE- 45 | 4.18 | 0 | Hydrophobic |
| SAJ | CG1 | ILE- 45 | 4.17 | 0 | Hydrophobic |
| OAN | NE2 | GLN- 51 | 3.01 | 165.6 | H-Bond (Protein Donor) |
| CAA | CG | GLU- 90 | 3.34 | 0 | Hydrophobic |
| CAK | CG | LEU- 93 | 4.12 | 0 | Hydrophobic |
| OAN | N | LEU- 93 | 2.7 | 166.48 | H-Bond (Protein Donor) |
| CAB | CD1 | LEU- 127 | 4.48 | 0 | Hydrophobic |
| CAA | CG1 | VAL- 130 | 3.83 | 0 | Hydrophobic |
| CAF | SG | CYS- 131 | 3.96 | 0 | Hydrophobic |
| CAF | CB | HIS- 134 | 4.2 | 0 | Hydrophobic |