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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4utk FNR Xenobiotic reductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4utk FNRXenobiotic reductase / 1.398
3n19 FNRXenobiotic reductase / 1.325
4utl FNRXenobiotic reductase / 1.286
5cpm FNRNADH:flavin oxidoreductase / 1.237
4uth FMNXenobiotic reductase / 1.207
4utm FNRXenobiotic reductase / 1.206
3l5l FMNXenobiotic reductase / 1.190
3l67 FMNXenobiotic reductase / 1.184
3n14 FMNXenobiotic reductase / 1.113
2h8x FMNXenA / 1.109
2gqa FMNNADH:flavin oxidoreductase Sye1 / 1.046
2gou FMNNADH:flavin oxidoreductase Sye1 / 1.040
3tjl FMNNADPH dehydrogenase / 1.010
4df2 FMNNADPH dehydrogenase / 1.009
1z48 FMNNADPH dehydrogenase / 1.001
4m5p FMNNADPH dehydrogenase / 0.995
1z44 FMNNADPH dehydrogenase / 0.975
4jic FMNGTN Reductase / 0.949
3hf3 FMNChromate reductase / 0.947
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.944
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.942
1oya FMNNADPH dehydrogenase 1 1.6.99.1 0.933
1djq FMNTrimethylamine dehydrogenase 1.5.8.2 0.930
1bwk FMNNADPH dehydrogenase 1 1.6.99.1 0.929
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.927
1z41 FMNNADPH dehydrogenase / 0.926
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.925
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.923
1icq FMN12-oxophytodienoate reductase 1 1.3.1.42 0.922
3p8j FMNPentaerythritol tetranitrate reductase / 0.921
4yco FMNtRNA-dihydrouridine(16) synthase / 0.919
3f03 FMNPentaerythritol tetranitrate reductase / 0.918
3gka FMNN-ethylmaleimide reductase / 0.915
3gr8 FMNNADPH dehydrogenase / 0.910
4tmc FMNOld yellow enzyme / 0.907
2abb FMNPentaerythritol tetranitrate reductase / 0.905
3p84 FMNPentaerythritol tetranitrate reductase / 0.904
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.902
1vhn FMNtRNA-dihydrouridine synthase / 0.901
1vyr FMNPentaerythritol tetranitrate reductase / 0.899
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.896
4k7y FMNNADPH dehydrogenase 1 1.6.99.1 0.896
3p8i FMNPentaerythritol tetranitrate reductase / 0.891
1q45 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.889
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.879
4awt FMNNADH:flavin oxidoreductase Sye1 / 0.878
3p67 FMNPentaerythritol tetranitrate reductase / 0.876
1vji FMN12-oxophytodienoate reductase 1 1.3.1.42 0.873
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.869
1h63 FMNPentaerythritol tetranitrate reductase / 0.865
4bf9 FMNtRNA-dihydrouridine(16) synthase / 0.862
4rnw FMNNADPH dehydrogenase 1 1.6.99.1 0.857
1gwj FMNMorphinone reductase / 0.855
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.855
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.845
3p62 FMNPentaerythritol tetranitrate reductase / 0.836
1h51 FMNPentaerythritol tetranitrate reductase / 0.833
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.829
1h50 FMNPentaerythritol tetranitrate reductase / 0.828
1k02 FMNNADPH dehydrogenase 1 1.6.99.1 0.823
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.823
3b04 OOPIsopentenyl-diphosphate delta-isomerase / 0.819
2zru FMNIsopentenyl-diphosphate delta-isomerase / 0.816
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.811
3p74 FMNPentaerythritol tetranitrate reductase / 0.809
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.807
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.801
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.799
3p82 FMNPentaerythritol tetranitrate reductase / 0.792
2nli FMNLactate oxidase / 0.790
2z6i FMN2-nitropropane dioxygenase / 0.777
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.755
4h6k FMNNADPH dehydrogenase 1 1.6.99.1 0.748
3b03 VNRIsopentenyl-diphosphate delta-isomerase / 0.742
4cw5 FMNDfnA / 0.742
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.740
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.740
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.734
4wzh FMNDihydroorotate dehydrogenase (fumarate) / 0.733
5ebu FMNLactate oxidase / 0.732
4yl2 FMNLactate oxidase / 0.731
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.728
4qai FMNNADPH dehydrogenase / 0.726
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.723
4xq6 FMNDihydroorotate dehydrogenase (quinone) / 0.722
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.721
2zrv FNRIsopentenyl-diphosphate delta-isomerase / 0.714
3aty FMNProstaglandin F2a synthase / 0.712
2q3o FMN12-oxophytodienoate reductase 3 1.3.1.42 0.710
4z38 FMNMlnA / 0.710
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.708
2du2 FMNLactate oxidase / 0.708
4tmb FMNOld yellow enzyme / 0.704
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.694
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 0.693
3bw2 FMNPutative 2-nitropropane dioxygenase / 0.692
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.690
2vi5 Y196,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.689
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.688
4h6r FDAProline dehydrogenase / 0.685
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.684
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 0.680
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.679
1szg FNSCytochrome b2, mitochondrial 1.1.2.3 0.679
2vyx FMNDodecin / 0.679
4l82 FMNUncharacterized protein / 0.670
4ttc FMNIodotyrosine deiodinase 1 / 0.670
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.669
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.668
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.667
2reh FADNitroalkane oxidase 1.7.3.1 0.666
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 0.665
2zrz FNRIsopentenyl-diphosphate delta-isomerase / 0.664
3bw3 FMNPutative 2-nitropropane dioxygenase / 0.661
3oix FMNDihydroorotate dehydrogenase / 0.661
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.660
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.659
4rhe FMNFlavin prenyltransferase UbiX / 0.659
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.657
3esz FMNFlavodoxin / 0.657
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.657
3n3b FMNProtein NrdI / 0.656
3n3a FMNProtein NrdI / 0.654
1r2j FADFkbI / 0.653
3bw4 FMNPutative 2-nitropropane dioxygenase / 0.652
2q61 SF1Peroxisome proliferator-activated receptor gamma / 0.651
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.650