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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4uof DAT Nucleoside diphosphate kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4uof DATNucleoside diphosphate kinase / 1.029
4fkx CDPNucleoside diphosphate kinase / 0.919
4uoh ADPNucleoside diphosphate kinase / 0.901
4uog YYYNucleoside diphosphate kinase / 0.880
3bbf GDPNucleoside diphosphate kinase B 2.7.4.6 0.871
1nue GDPNucleoside diphosphate kinase B 2.7.4.6 0.867
1zs6 ADPNucleoside diphosphate kinase 3 2.7.4.6 0.850
2dxe GDPNucleoside diphosphate kinase 2.7.4.6 0.843
2dy9 ADPNucleoside diphosphate kinase 2.7.4.6 0.828
2hvd ADPNucleoside diphosphate kinase A 2.7.4.6 0.801
1ndc TYDNucleoside diphosphate kinase, cytosolic 2.7.4.6 0.784
2hve ADPNucleoside diphosphate kinase A 2.7.4.6 0.763
3ngu ADPNucleoside diphosphate kinase / 0.753
4hr2 ADPNucleoside diphosphate kinase / 0.722
2az3 CDPNucleoside diphosphate kinase / 0.700
2dxf GNPNucleoside diphosphate kinase 2.7.4.6 0.699
1lwx AZDNucleoside diphosphate kinase, cytosolic 2.7.4.6 0.683
1vp6 CMPCyclic nucleotide-gated potassium channel mll3241 / 0.651