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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4uda DEX Mineralocorticoid receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4uda DEXMineralocorticoid receptor / 1.162
2a3i C0RMineralocorticoid receptor / 0.951
4udc DEXGlucocorticoid receptor / 0.909
2aa2 AS4Mineralocorticoid receptor / 0.884
2aa7 1CAMineralocorticoid receptor / 0.874
3mnp DEXGlucocorticoid receptor / 0.857
2abi 1CAMineralocorticoid receptor / 0.814
3vhu SNLMineralocorticoid receptor / 0.780
1m2z DEXGlucocorticoid receptor / 0.725
2aa5 STRMineralocorticoid receptor / 0.698
1p93 DEXGlucocorticoid receptor / 0.686
2aa6 STRMineralocorticoid receptor / 0.665
3cas ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.662
3eqm ASDAromatase 1.14.14.14 0.661
4p6x HCYGlucocorticoid receptor / 0.658
1sqn NDRProgesterone receptor / 0.650