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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4u3j GTP Tubulin beta chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4u3j GTPTubulin beta chain / 1.013
4ihj GTPTubulin alpha-1B chain / 0.779
5itz GTPTubulin alpha-1B chain / 0.771
5jqg GTPTubulin alpha-1B chain / 0.770
4o4i GTPTubulin alpha-1B chain / 0.765
4tv9 GTPTubulin alpha-1B chain / 0.757
4o4l GTPTubulin alpha-1B chain / 0.752
3ryh GTPTubulin alpha chain / 0.742
4yj2 GTPTubulin alpha-1B chain / 0.734
4tuy GTPTubulin alpha-1B chain / 0.724
4ffb GTPTubulin alpha-1 chain / 0.723
5la6 GDPTubulin beta-2B chain / 0.719
4wbn GTPTubulin alpha-1B chain / 0.710
4iij GTPTubulin alpha-1B chain / 0.698
5la6 GTPTubulin alpha-1B chain / 0.697
3cb2 GDPTubulin gamma-1 chain / 0.688
4b45 GSPTubulin-like protein CetZ2 / 0.683
1z5w GTPTubulin gamma-1 chain / 0.682
4zol GTPTubulin alpha-1B chain / 0.675
4ei7 GDPPlasmid replication protein RepX / 0.665
3zid GDPTubulin-like protein CetZ / 0.659