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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4u0o MTA Lipoyl synthase 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4u0o MTALipoyl synthase 2 / 0.943
1mjh ATPUniversal stress protein MJ0577 / 0.691
1lp4 ANPCasein kinase II subunit alpha 2.7.11.1 0.674
4lrz ADPPEP-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL 2.7 0.672
4axd ANPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.671
4iad ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.667
4iak ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.665
3s3t ATPUniversal stress protein / 0.664
4dg3 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.659
2pck SAHDiphthine synthase / 0.657
2zbv ADNUncharacterized protein / 0.657
3oij SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.657
4r1l ADPPhenylacetate-coenzyme A ligase / 0.654
4aqk ADPInositol-pentakisphosphate 2-kinase 2.7.1.158 0.653
4iai ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.651
4rvo ADPPhenylacetate-coenzyme A ligase / 0.651
5c1p ADPD-alanine--D-alanine ligase / 0.651