sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 4tuy | GTP | Tubulin alpha-1B chain |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 4tuy | GTP | Tubulin alpha-1B chain | / | 1.375 | |
| 4tv9 | GTP | Tubulin alpha-1B chain | / | 1.365 | |
| 4ihj | GTP | Tubulin alpha-1B chain | / | 1.346 | |
| 4wbn | GTP | Tubulin alpha-1B chain | / | 1.328 | |
| 4o4l | GTP | Tubulin alpha-1B chain | / | 1.326 | |
| 5la6 | GTP | Tubulin alpha-1B chain | / | 1.309 | |
| 4iij | GTP | Tubulin alpha-1B chain | / | 1.294 | |
| 5jqg | GTP | Tubulin alpha-1B chain | / | 1.293 | |
| 4o4i | GTP | Tubulin alpha-1B chain | / | 1.262 | |
| 4zol | GTP | Tubulin alpha-1B chain | / | 1.261 | |
| 5itz | GTP | Tubulin alpha-1B chain | / | 1.223 | |
| 3ryh | GTP | Tubulin alpha chain | / | 1.169 | |
| 4yj2 | GTP | Tubulin alpha-1B chain | / | 1.159 | |
| 3cb2 | GDP | Tubulin gamma-1 chain | / | 0.966 | |
| 3zid | GDP | Tubulin-like protein CetZ | / | 0.909 | |
| 4ffb | GTP | Tubulin alpha-1 chain | / | 0.909 | |
| 5la6 | GDP | Tubulin beta-2B chain | / | 0.813 | |
| 1z5v | GSP | Tubulin gamma-1 chain | / | 0.803 | |
| 2xka | GSP | Cell division protein FtsZ | / | 0.726 | |
| 4u3j | GTP | Tubulin beta chain | / | 0.724 | |
| 1z5w | GTP | Tubulin gamma-1 chain | / | 0.713 | |
| 4b45 | GSP | Tubulin-like protein CetZ2 | / | 0.704 | |
| 4f6r | GDP | Tubulin beta chain | / | 0.698 | |
| 2r6r | GDP | Cell division protein FtsZ | / | 0.694 | |
| 3m0e | ATP | Transcriptional regulator (NtrC family) | / | 0.694 | |
| 5ahk | TPP | Acetolactate synthase II, large subunit | / | 0.685 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.680 | |
| 4ej7 | ATP | Aminoglycoside 3'-phosphotransferase AphA1-IAB | / | 0.678 | |
| 1w5a | GTP | Cell division protein FtsZ 1 | / | 0.671 | |
| 4xj3 | GTP | Cyclic GMP-AMP synthase | / | 0.670 | |
| 2ywv | ADP | Phosphoribosylaminoimidazole-succinocarboxamide synthase | / | 0.669 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.669 | |
| 2xul | ATP | Nitrogen regulatory protein P-II | / | 0.668 | |
| 3dyl | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.668 | |
| 3tgp | GNP | GTPase HRas | / | 0.667 | |
| 2py7 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.666 | |
| 1ozh | HE3 | Acetolactate synthase, catabolic | 2.2.1.6 | 0.664 | |
| 3dkv | AP5 | Adenylate kinase | / | 0.664 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.660 | |
| 3i3s | GNP | GTPase HRas | / | 0.659 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.658 | |
| 1ih8 | APC | NH(3)-dependent NAD(+) synthetase | 6.3.1.5 | 0.656 | |
| 2bto | GTP | Tubulin | / | 0.654 | |
| 4juc | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.654 | |
| 1s22 | ATP | Actin, alpha skeletal muscle | / | 0.653 | |
| 2olq | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.653 | |
| 5c4i | TPP | Oxalate oxidoreductase subunit alpha | / | 0.653 | |
| 5c4i | TPP | Oxalate oxidoreductase subunit beta | / | 0.653 | |
| 3exh | TPP | Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial | 1.2.4.1 | 0.652 | |
| 3exh | TPP | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial | 1.2.4.1 | 0.652 | |
| 4fvq | ATP | Tyrosine-protein kinase JAK2 | / | 0.652 | |
| 4dwb | 0M7 | Farnesyl pyrophosphate synthase | / | 0.650 | |
| 4fyx | UTP | Aspartate carbamoyltransferase regulatory chain | / | 0.650 |