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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4s1h ADP Pyridoxal kinase, putative

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4s1h ADPPyridoxal kinase, putative / 1.086
3hyo ADPPyridoxal kinase / 0.707
5c3z ACPRibokinase / 0.700
3umo ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.694
3keu ATPPyridoxal kinase 2.7.1.35 0.692
2i5b ADPPyridoxine kinase / 0.688
3otx AP5Adenosine kinase, putative / 0.686
4ozn ATPAmmonium transporter / 0.685
3hu3 AGSTransitional endoplasmic reticulum ATPase 3.6.4.6 0.684
4en4 ATPPyridoxal kinase 2.7.1.35 0.684
3ump ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.679
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.676
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.675
3uqd ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.674
4xeo A5AAlanine--tRNA ligase, cytoplasmic / 0.674
3tw6 ADPPyruvate carboxylase / 0.671
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.671
1lik ADNAdenosine kinase 2.7.1.20 0.670
4jlp ADPAdenylate kinase / 0.669
4xf6 ADPCarbohydrate/pyrimidine kinase, PfkB family / 0.668
2yxu ATPPyridoxal kinase 2.7.1.35 0.665
3oii SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.665
4jlb ADPAdenylate kinase / 0.665
5c40 ACPRibokinase / 0.665
3uqd ADPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.664
2xul ATPNitrogen regulatory protein P-II / 0.663
3oij SAHRibosomal RNA small subunit methyltransferase NEP1 / 0.662
4x3l MTARNA 2'-O ribose methyltransferase / 0.662
2ab8 ACPAdenosine kinase 2.7.1.20 0.660
2b9j ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.659
2dcn ADP2-keto-3-deoxy-gluconate kinase / 0.659
4fu0 ADPD-alanine--D-alanine ligase / 0.659
4kgn SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.658
4prx ADPDNA gyrase subunit B / 0.658
5g53 NECAdenosine receptor A2a / 0.658
2b9f ADPMitogen-activated protein kinase FUS3 2.7.11.24 0.657
5c41 ACPRibokinase / 0.657
2zbv ADNUncharacterized protein / 0.656
1s16 ANPDNA topoisomerase 4 subunit B / 0.655
2aa0 MTPAdenosine kinase 2.7.1.20 0.654
2zio AYBPyrrolysine--tRNA ligase / 0.654
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.654
4l2i FADElectron transfer flavoprotein alpha/beta-subunit / 0.654
5c3y AN2Ribokinase / 0.653
4h3q ANPMitogen-activated protein kinase 1 2.7.11.24 0.652
3bbd SAHRibosomal RNA small subunit methyltransferase Nep1 2.1.1 0.651
4iaf ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651
3gon ANPPhosphomevalonate kinase / 0.650
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.650