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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4s1b 2BA Lmo1466 protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4s1b 2BALmo1466 protein / 1.030
1s16 ANPDNA topoisomerase 4 subunit B / 0.673
4hbn CMPPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 / 0.670
3ryp CMPcAMP-activated global transcriptional regulator CRP / 0.668
2dy9 ADPNucleoside diphosphate kinase 2.7.4.6 0.665
3a5y KAAElongation factor P--(R)-beta-lysine ligase / 0.665
4ku7 PCGcGMP-dependent protein kinase 1 2.7.11.12 0.665
2io9 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.664
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.663
1mjh ATPUniversal stress protein MJ0577 / 0.660
2ptm CMPHyperpolarization-activated (Ih) channel / 0.660
3a5z KAAElongation factor P--(R)-beta-lysine ligase / 0.659
2dxe GDPNucleoside diphosphate kinase 2.7.4.6 0.657
4mkg AP5Adenylate kinase / 0.655
2gzw CMPcAMP-activated global transcriptional regulator CRP / 0.654
4cnf MTASpoU rRNA methylase / 0.651