Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rvo ADP Phenylacetate-coenzyme A ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rvo ADPPhenylacetate-coenzyme A ligase / 0.994
4r1l ADPPhenylacetate-coenzyme A ligase / 0.816
2p20 PRXAcetyl-coenzyme A synthetase / 0.706
4g37 SLULuciferin 4-monooxygenase 1.13.12.7 0.703
2p2m PRXAcetyl-coenzyme A synthetase / 0.700
5ifi PRXAcetyl-coenzyme A synthetase / 0.700
3kxw 1ZZSaframycin Mx1 synthetase B / 0.699
2d1s SLULuciferin 4-monooxygenase 1.13.12.7 0.695
2p2b PRXAcetyl-coenzyme A synthetase / 0.694
2p2j PRXAcetyl-coenzyme A synthetase / 0.685
3ies M24Luciferin 4-monooxygenase 1.13.12.7 0.684
2p2q PRXAcetyl-coenzyme A synthetase / 0.682
1v25 ANPLong-chain-fatty-acid--CoA ligase 6.2.1.3 0.680
3cw8 00A4-chlorobenzoyl CoA ligase / 0.664
4u0o MTALipoyl synthase 2 / 0.651