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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rv9 SAH D-mycarose 3-C-methyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rv9 SAHD-mycarose 3-C-methyltransferase / 0.938
4rvd SAMD-mycarose 3-C-methyltransferase / 0.812
4e2x SAHMethyltransferase / 0.759
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.668
2aot SAHHistamine N-methyltransferase 2.1.1.8 0.665
3iv6 SAMUncharacterized protein / 0.663
3khu UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.662
2v7t SAH5'-fluoro-5'-deoxy-adenosine synthase / 0.651
3uj8 SFGPhosphoethanolamine N-methyltransferase / 0.651