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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rtr SAM DNA adenine methylase 2.1.1.72

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rtr SAMDNA adenine methylase 2.1.1.72 0.982
4rts SAMDNA adenine methylase 2.1.1.72 0.902
2ore SAHDNA adenine methylase 2.1.1.72 0.874
4rtq SAHDNA adenine methylase 2.1.1.72 0.870
4rtn SAHDNA adenine methylase 2.1.1.72 0.774
2g1p SAHDNA adenine methylase 2.1.1.72 0.769
4gol SA8DNA adenine methylase 2.1.1.72 0.767
4rtk SAHDNA adenine methylase 2.1.1.72 0.767
4rto SFGDNA adenine methylase 2.1.1.72 0.756
1yf3 SAHDNA adenine methylase / 0.754
4rtj SFGDNA adenine methylase 2.1.1.72 0.736
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.730
4gbe SAHDNA adenine methylase 2.1.1.72 0.730
4rtm SAMDNA adenine methylase 2.1.1.72 0.726
1eg2 MTAModification methylase RsrI 2.1.1.72 0.717
3ldg SAHUncharacterized protein / 0.705
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.703
2dpm SAMModification methylase DpnIIA 2.1.1.72 0.701
3tm4 SAMUncharacterized protein / 0.695
1nw6 SFGModification methylase RsrI 2.1.1.72 0.694
1nw5 SAMModification methylase RsrI 2.1.1.72 0.691
5dx8 SFGHistone-arginine methyltransferase CARM1 / 0.690
4fzv SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.687
2yx1 SFGtRNA (guanine(37)-N1)-methyltransferase Trm5b 2.1.1.228 0.684
2yxl SFG450aa long hypothetical fmu protein / 0.682
1uay ADNOxidoreductase / 0.671
5dxj SFGHistone-arginine methyltransferase CARM1 / 0.671
1y8q ATPSUMO-activating enzyme subunit 2 6.3.2 0.669
3tm5 SFGUncharacterized protein / 0.666
4c03 SFGProtein arginine N-methyltransferase 6 / 0.666
2pkk 2FAAdenosine kinase 2.7.1.20 0.663
3axs SFGtRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase / 0.662
3tri NAPPyrroline-5-carboxylate reductase / 0.662
3b3f SAHHistone-arginine methyltransferase CARM1 / 0.660
2zzn SAMtRNA (guanine(37)-N1)-methyltransferase Trm5b 2.1.1.228 0.658
3tlj SAHUncharacterized protein / 0.658
4dcm SAMRibosomal RNA large subunit methyltransferase G 2.1.1.174 0.658
4wcx SAMBiotin and thiamin synthesis associated / 0.657
4wxx SAHDNA (cytosine-5)-methyltransferase 1 2.1.1.37 0.656
5dxa SFGHistone-arginine methyltransferase CARM1 / 0.654
1skm SAHModification methylase HhaI 2.1.1.37 0.653
2hv9 SFGmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.653
5dx1 SFGHistone-arginine methyltransferase CARM1 / 0.653
5je2 SAHMethyl transferase / 0.653
9mht SAHModification methylase HhaI 2.1.1.37 0.653
2c7q SAHModification methylase HhaI 2.1.1.37 0.652
4rtl SFGDNA adenine methylase 2.1.1.72 0.652
2uyh SAHModification methylase HhaI 2.1.1.37 0.651
3v8v SAMRibosomal RNA large subunit methyltransferase K/L 2.1.1.173 0.651
5dwq SFGHistone-arginine methyltransferase CARM1 / 0.651