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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rtn SAH DNA adenine methylase 2.1.1.72

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rtn SAHDNA adenine methylase 2.1.1.72 0.907
4rtq SAHDNA adenine methylase 2.1.1.72 0.815
2ore SAHDNA adenine methylase 2.1.1.72 0.792
4gol SA8DNA adenine methylase 2.1.1.72 0.791
4rtr SAMDNA adenine methylase 2.1.1.72 0.774
4rtp SAMDNA adenine methylase 2.1.1.72 0.753
4rtm SAMDNA adenine methylase 2.1.1.72 0.752
4rts SAMDNA adenine methylase 2.1.1.72 0.750
4rtk SAHDNA adenine methylase 2.1.1.72 0.744
4rto SFGDNA adenine methylase 2.1.1.72 0.739
2g1p SAHDNA adenine methylase 2.1.1.72 0.721
4rtj SFGDNA adenine methylase 2.1.1.72 0.716
1eg2 MTAModification methylase RsrI 2.1.1.72 0.707
2dpm SAMModification methylase DpnIIA 2.1.1.72 0.707
4gbe SAHDNA adenine methylase 2.1.1.72 0.702
1nw6 SFGModification methylase RsrI 2.1.1.72 0.695
1yf3 SAHDNA adenine methylase / 0.691
1boo SAHModification methylase PvuII 2.1.1.113 0.686
2zzn SAMtRNA (guanine(37)-N1)-methyltransferase Trm5b 2.1.1.228 0.685
1uay ADNOxidoreductase / 0.679
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.671
2cww SAHUncharacterized protein / 0.668
4rtl SFGDNA adenine methylase 2.1.1.72 0.667
3s1s SAHRestriction endonuclease BpuSI / 0.666
5e72 SAMN2, N2-dimethylguanosine tRNA methyltransferase / 0.664
4xcx SAHSmall RNA 2'-O-methyltransferase / 0.658
1bc5 SAHChemotaxis protein methyltransferase 2.1.1.80 0.656
3axt SAMtRNA (guanine(26)-N(2)/guanine(27)-N(2))-dimethyltransferase / 0.655
10mh SAHModification methylase HhaI 2.1.1.37 0.653
2yx1 SFGtRNA (guanine(37)-N1)-methyltransferase Trm5b 2.1.1.228 0.653
1g60 SAMModification methylase MboII 2.1.1.72 0.651
4fzv SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.650