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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rri A3T Probable threonine--tRNA ligase 2 6.1.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rri A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.955
4rra A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.933
4rrd A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.918
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.895
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.893
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.892
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.874
4rr9 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.874
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.867
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.865
4rrl A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.857
4rrk A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.856
4rrr A3TThreonine--tRNA ligase 6.1.1.3 0.849
4rrc A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.829
3pd3 A3TThreonine--tRNA ligase 6.1.1.3 0.805
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.792
4rrq A3SThreonine--tRNA ligase 6.1.1.3 0.776
3pd4 A3GThreonine--tRNA ligase 6.1.1.3 0.775
4rrj A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.769
2hl1 A3SThreonine--tRNA ligase 6.1.1.3 0.767
4rrf A3SThreonine--tRNA ligase 6.1.1.3 0.751
3pd5 TSBThreonine--tRNA ligase 6.1.1.3 0.727
2hl2 SSAThreonine--tRNA ligase 6.1.1.3 0.725
2hl0 A3SThreonine--tRNA ligase 6.1.1.3 0.716
4rrg A3TThreonine--tRNA ligase 6.1.1.3 0.705
4nbj D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.691
4nbi D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.690
2e8h SAHDiphthine synthase / 0.650