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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rrh A3S Probable threonine--tRNA ligase 2 6.1.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.926
4rr9 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.901
4rrl A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.901
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.900
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.895
4rri A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.895
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.890
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.877
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.875
4rrk A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.861
4rrd A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.860
4rra A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.857
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.816
4rrq A3SThreonine--tRNA ligase 6.1.1.3 0.810
4rrc A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.799
4rrj A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.786
2hl1 A3SThreonine--tRNA ligase 6.1.1.3 0.770
3pd3 A3TThreonine--tRNA ligase 6.1.1.3 0.770
4rrr A3TThreonine--tRNA ligase 6.1.1.3 0.752
4rrf A3SThreonine--tRNA ligase 6.1.1.3 0.747
3pd4 A3GThreonine--tRNA ligase 6.1.1.3 0.746
2hl0 A3SThreonine--tRNA ligase 6.1.1.3 0.743
2hl2 SSAThreonine--tRNA ligase 6.1.1.3 0.742
4rrg A3TThreonine--tRNA ligase 6.1.1.3 0.704
3pd5 TSBThreonine--tRNA ligase 6.1.1.3 0.702
4nbj D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.688
4nbi D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.676
2emr SAHDiphthine synthase / 0.651
2huq SAHDiphthine synthase / 0.651
2p5f SAHDiphthine synthase / 0.651
2pch SAHDiphthine synthase / 0.651
2eh4 SAHDiphthine synthase / 0.650
2eka SAHDiphthine synthase / 0.650
2eld SAHDiphthine synthase / 0.650
2en5 SAHDiphthine synthase / 0.650
2huv SAHDiphthine synthase / 0.650
2owg SAHDiphthine synthase / 0.650