Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rrd A3T Probable threonine--tRNA ligase 2 6.1.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rrd A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.952
4rra A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.929
4rri A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.918
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.888
4rr9 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.878
4rrc A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.872
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.868
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.866
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.860
4rrk A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.856
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.852
4rrl A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.825
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.822
4rrr A3TThreonine--tRNA ligase 6.1.1.3 0.782
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.771
4rrj A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.766
2hl1 A3SThreonine--tRNA ligase 6.1.1.3 0.733
3pd3 A3TThreonine--tRNA ligase 6.1.1.3 0.715
4rrq A3SThreonine--tRNA ligase 6.1.1.3 0.710
4rrg A3TThreonine--tRNA ligase 6.1.1.3 0.706
4rrf A3SThreonine--tRNA ligase 6.1.1.3 0.684
3pd4 A3GThreonine--tRNA ligase 6.1.1.3 0.677
4nbj D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.671
2hl0 A3SThreonine--tRNA ligase 6.1.1.3 0.663
4nbi D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.662