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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4rrb A3T Probable threonine--tRNA ligase 2 6.1.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4rrb A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.923
4rri A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.892
4rrm A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.892
4rr9 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.875
4rrh A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.875
4rr7 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.870
4rrd A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.866
4rra A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.861
4rr6 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.857
4rrk A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.857
4rr8 A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.853
4rrl A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.837
4rrc A3TProbable threonine--tRNA ligase 2 6.1.1.3 0.816
3pd2 A3SThreonine--tRNA ligase 6.1.1.3 0.805
4rrq A3SThreonine--tRNA ligase 6.1.1.3 0.786
3pd3 A3TThreonine--tRNA ligase 6.1.1.3 0.782
4rrr A3TThreonine--tRNA ligase 6.1.1.3 0.764
3pd4 A3GThreonine--tRNA ligase 6.1.1.3 0.761
4rrj A3SProbable threonine--tRNA ligase 2 6.1.1.3 0.750
2hl0 A3SThreonine--tRNA ligase 6.1.1.3 0.747
2hl1 A3SThreonine--tRNA ligase 6.1.1.3 0.733
3pd5 TSBThreonine--tRNA ligase 6.1.1.3 0.725
2hl2 SSAThreonine--tRNA ligase 6.1.1.3 0.723
4rrf A3SThreonine--tRNA ligase 6.1.1.3 0.715
4rrg A3TThreonine--tRNA ligase 6.1.1.3 0.706
4nbj D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.678
4nbi D3YD-tyrosyl-tRNA(Tyr) deacylase / 0.673
2e8s SAHDiphthine synthase / 0.654
2el3 SAHDiphthine synthase / 0.654
2emr SAHDiphthine synthase / 0.654
2pch SAHDiphthine synthase / 0.654
2e8q SAHDiphthine synthase / 0.653
2eh4 SAHDiphthine synthase / 0.653
2ek4 SAHDiphthine synthase / 0.653
2eka SAHDiphthine synthase / 0.653
2en5 SAHDiphthine synthase / 0.653
2huq SAHDiphthine synthase / 0.653
2owg SAHDiphthine synthase / 0.653
2p6d SAHDiphthine synthase / 0.653
2pb5 SAHDiphthine synthase / 0.653
2egs SAHDiphthine synthase / 0.652
2hux SAHDiphthine synthase / 0.652
2p2x SAHDiphthine synthase / 0.652
2p5c SAHDiphthine synthase / 0.652
2pcg SAHDiphthine synthase / 0.652
2dv3 SAHDiphthine synthase / 0.651
2e8r SAHDiphthine synthase / 0.651
2ed5 SAHDiphthine synthase / 0.651
2pb6 SAHDiphthine synthase / 0.650