Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4r7u UD1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4r7u UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.230
1ryw EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.057
3lth UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.047
3vcy UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.046
3upk UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.014
3swq EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.013
3kr6 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.002
3kqj UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.978
3v4t UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.977
1q3g UDAUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.973
1uae UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.965
2rl2 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.948
2rl1 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.905
1a2n TETUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.899
2yvw EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.872
3iss EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.790