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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4q4k FMN Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4q4k FMNUncharacterized protein / 1.131
3bw3 FMNPutative 2-nitropropane dioxygenase / 0.954
3bw4 FMNPutative 2-nitropropane dioxygenase / 0.925
3bw2 FMNPutative 2-nitropropane dioxygenase / 0.909
2z6i FMN2-nitropropane dioxygenase / 0.803
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.757
4rje FNRLactate oxidase / 0.723
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.704
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.702
4utl FNRXenobiotic reductase / 0.701
4uth FMNXenobiotic reductase / 0.693
3l5l FMNXenobiotic reductase / 0.682
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.676
3p82 FMNPentaerythritol tetranitrate reductase / 0.676
1llz FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.673
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.673
1ep1 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.671
2gjn FMNNitronate monooxygenase 1.13.12.16 0.670
4utm FNRXenobiotic reductase / 0.667
1oyc FMNNADPH dehydrogenase 1 1.6.99.1 0.666
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.665
3b05 FNRIsopentenyl-diphosphate delta-isomerase / 0.662
3hf3 FMNChromate reductase / 0.660
4nmc FADBifunctional protein PutA / 0.659
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.656
2gjl FMNNitronate monooxygenase 1.13.12.16 0.655
3gye FMNDihydroorotate dehydrogenase (fumarate) / 0.655
5dkk FMNPredicted protein / 0.654
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.653
1icp FMN12-oxophytodienoate reductase 1 1.3.1.42 0.652
2g37 FADProline dehydrogenase / 0.652
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.651
2bsl FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.650