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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4pu2 PLU Aminopeptidase N

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4pu2 PLUAminopeptidase N / 0.972
2zxg S23Aminopeptidase N 3.4.11.2 0.771
3q43 D66M1 family aminopeptidase 3.4.11 0.755
4fkk BESAminopeptidase N 3.4.11.2 0.735
4k5o 1OTM1 family aminopeptidase 3.4.11 0.734
4k5p 1OSM1 family aminopeptidase 3.4.11 0.714
2hpt BESAminopeptidase N 3.4.11.2 0.711
2yd0 BESEndoplasmic reticulum aminopeptidase 1 3.4.11 0.702
2xq0 BESLeukotriene A-4 hydrolase homolog 3.3.2.6 0.698
4xmx BESAminopeptidase N 3.4.11.2 0.698
2dqm BESAminopeptidase N 3.4.11.2 0.695
3q44 D50M1 family aminopeptidase 3.4.11 0.694
3ebi BEYM1 family aminopeptidase 3.4.11 0.687
3chr 4BSLeukotriene A-4 hydrolase 3.3.2.6 0.666
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
2r59 PH0Leukotriene A-4 hydrolase 3.3.2.6 0.658
2oym MNIEndoglycoceramidase II / 0.657
2xy9 3ESAngiotensin-converting enzyme 3.2.1 0.654