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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4pl8 ATP Actin, alpha skeletal muscle

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4pl8 ATPActin, alpha skeletal muscle / 1.116
4k41 ATPActin, alpha skeletal muscle / 1.091
1qz5 ATPActin, alpha skeletal muscle / 1.089
1s22 ATPActin, alpha skeletal muscle / 1.089
4pkg ATPActin, alpha skeletal muscle / 1.089
1t44 ATPActin, alpha skeletal muscle / 1.074
4pki ATPActin, alpha skeletal muscle / 1.072
1c0f ATPMajor actin / 1.065
3w3d ATPActin, gamma-enteric smooth muscle / 1.062
3m6g ATPActin, alpha skeletal muscle / 1.061
1dej ATPMajor actin / 1.051
2v51 ATPActin, alpha skeletal muscle / 1.051
1wua ATPActin, alpha skeletal muscle / 1.050
4b1v ATPActin, alpha skeletal muscle / 1.045
2q97 ATPActin, alpha skeletal muscle / 1.036
2q36 ATPActin, alpha skeletal muscle / 1.035
3a5o ATPMajor actin / 1.035
3daw ATPActin, alpha skeletal muscle / 1.020
1kxp ATPActin, alpha skeletal muscle / 1.019
3m1f ATPActin, alpha skeletal muscle / 1.015
1nlv ATPMajor actin / 1.013
3eku ATPActin-5C / 1.002
3mn9 ATPActin-5C / 1.000
3mn6 ATPActin-5C / 0.987
1rgi ATPActin, alpha skeletal muscle / 0.985
5ce3 ATPActin / 0.984
1eqy ATPActin, alpha skeletal muscle / 0.983
3chw ATPMajor actin / 0.983
1mdu ATPActin, alpha skeletal muscle / 0.980
2a41 ATPActin, alpha skeletal muscle / 0.980
3eks ATPActin-5C / 0.969
3mn7 ATPActin-5C / 0.968
2oan ATPActin, cytoplasmic 1 / 0.961
3ffk ATPActin, alpha skeletal muscle / 0.953
4cbx ATPActin-2 / 0.949
4ci6 ATPActin / 0.936
3tu5 ATPActin, alpha skeletal muscle / 0.928
3el2 ATPActin-5C / 0.902
1h1v ATPActin, alpha skeletal muscle / 0.897
1atn ATPActin, alpha skeletal muscle / 0.894
1ijj ATPActin, alpha skeletal muscle / 0.875
2p9k ATPActin-related protein 2 / 0.871
1lot ATPActin, alpha skeletal muscle / 0.863
4pkh ADPActin, alpha skeletal muscle / 0.852
3wt0 ATPCell division protein FtsA / 0.845
4m63 ATPActin-5C / 0.822
4b9q ATPChaperone protein DnaK / 0.817
4k42 ADPActin, alpha skeletal muscle / 0.816
3a5m ATPMajor actin / 0.813
1yxq ATPActin, alpha skeletal muscle / 0.801
3d2e ATPHeat shock protein homolog SSE1 / 0.789
4a61 ANPPlasmid segregation protein ParM / 0.774
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.774
1nmd ATPMajor actin / 0.769
3wqt ANPCell division protein FtsA / 0.762
4k43 ADPActin, alpha skeletal muscle / 0.744
1nm1 ATPMajor actin / 0.742
1rfq ATPActin, alpha skeletal muscle / 0.731
4jhd ANPActin-5C / 0.725
4a62 ANPPlasmid segregation protein ParM / 0.724
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.718
2zgz GNPPlasmid segregation protein ParM / 0.694
5f1x ATP78 kDa glucose-regulated protein / 0.691
3ldl ATP78 kDa glucose-regulated protein / 0.689
2fsn ADPArchaeal actin homolog / 0.688
3ldo ANP78 kDa glucose-regulated protein / 0.688
3u4l ATPActin, cytoplasmic 1 / 0.682
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.682
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.681
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.668
1ngh ATPHeat shock cognate 71 kDa protein / 0.666
4bqz GNPEctonucleoside triphosphate diphosphohydrolase 2 / 0.665
4a2a ATPCell division protein FtsA / 0.664
3ule ATPActin-related protein 2 / 0.659
1mwm ADPPlasmid segregation protein ParM / 0.658
4iij GTPTubulin alpha-1B chain / 0.657
1ngd ADPHeat shock cognate 71 kDa protein / 0.656
2qwn ADPHeat shock cognate 71 kDa protein / 0.656
4fvq ATPTyrosine-protein kinase JAK2 / 0.656
3hsc ADPHeat shock cognate 71 kDa protein / 0.651
3ryh GTPTubulin alpha chain / 0.650