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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4pda CTN Nucleoside permease

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4pda CTNNucleoside permease / 0.915
4pd6 URINucleoside permease / 0.860
3tij URINucleoside permease / 0.859
4pb1 RBVNucleoside permease / 0.819
4pb2 5UDNucleoside permease / 0.815
4pd5 GEONucleoside permease / 0.783
3v0m 5GWHisto-blood group ABO system transferase / 0.688
4kc1 WS1Histo-blood group ABO system transferase / 0.660
3zgf IUGHisto-blood group ABO system transferase / 0.658
5c1g GDUHisto-blood group ABO system transferase / 0.657
3s6a ANPAdenosine monophosphate-protein transferase NmFic 2.7.7.n1 0.656
4okk U5P3'-5' exoribonuclease MT2234.1 / 0.656
5c48 URMHisto-blood group ABO system transferase / 0.656
5c3b URMHisto-blood group ABO system transferase / 0.654
4kc4 WS3Histo-blood group ABO system transferase / 0.653
5c1h GDUHisto-blood group ABO system transferase / 0.652
1zdg UPGGlycogenin-1 2.4.1.186 0.651
3v0n 4GWHisto-blood group ABO system transferase / 0.650
5c1l GDUHisto-blood group ABO system transferase / 0.650