2.200 Å
X-ray
2011-05-25
Name: | Adenosine monophosphate-protein transferase NmFic |
---|---|
ID: | NMFIC_NEIMB |
AC: | Q7DDR9 |
Organism: | Neisseria meningitidis serogroup B |
Reign: | Bacteria |
TaxID: | 122586 |
EC Number: | 2.7.7.n1 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 32.639 |
---|---|
Number of residues: | 36 |
Including | |
Standard Amino Acids: | 34 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 2 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.343 | 496.125 |
% Hydrophobic | % Polar |
---|---|
51.70 | 48.30 |
According to VolSite |
HET Code: | ANP |
---|---|
Formula: | C10H13N6O12P3 |
Molecular weight: | 502.164 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 64.72 % |
Polar Surface area: | 322.68 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 16 |
H-Bond Donors: | 4 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 4 |
Cationic atoms: | 0 |
Rule of Five Violation: | 2 |
Rotatable Bonds: | 8 |
X | Y | Z |
---|---|---|
-25.0587 | 67.6706 | -5.162 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
O2A | NZ | LYS- 67 | 2.65 | 170.28 | H-Bond (Protein Donor) |
O3A | NZ | LYS- 67 | 3.42 | 120.39 | H-Bond (Protein Donor) |
O2A | NZ | LYS- 67 | 2.65 | 0 | Ionic (Protein Cationic) |
N3 | ND2 | ASN- 104 | 2.84 | 173.89 | H-Bond (Protein Donor) |
O2A | NE2 | HIS- 107 | 2.96 | 159.36 | H-Bond (Protein Donor) |
O1A | N | ASN- 113 | 2.86 | 157.88 | H-Bond (Protein Donor) |
O1A | ND2 | ASN- 113 | 2.83 | 158.54 | H-Bond (Protein Donor) |
O2B | N | GLY- 114 | 3.49 | 147.56 | H-Bond (Protein Donor) |
O5' | N | GLY- 114 | 3.15 | 126.5 | H-Bond (Protein Donor) |
O3' | NH1 | ARG- 118 | 2.97 | 154.49 | H-Bond (Protein Donor) |
C2' | CE2 | TYR- 143 | 4.35 | 0 | Hydrophobic |
O2' | OH | TYR- 143 | 3.12 | 143.77 | H-Bond (Ligand Donor) |
C3' | CD2 | LEU- 144 | 4.18 | 0 | Hydrophobic |
C2' | CG | MET- 147 | 3.9 | 0 | Hydrophobic |
C1' | CB | MET- 147 | 4.35 | 0 | Hydrophobic |
C5' | CG | GLU- 186 | 4.13 | 0 | Hydrophobic |
O3' | OE2 | GLU- 186 | 2.83 | 160.4 | H-Bond (Ligand Donor) |
O3' | OE1 | GLU- 186 | 3 | 133.79 | H-Bond (Ligand Donor) |