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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ozn ATP Ammonium transporter

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ozn ATPAmmonium transporter / 1.014
4co4 ATPNitrogen regulatory protein P-II 1 / 0.776
2xul ATPNitrogen regulatory protein P-II / 0.720
1v3s ATPSignaling protein / 0.715
3ta0 ATPNitrogen regulatory protein P-II (GlnB-3) / 0.694
4s1h ADPPyridoxal kinase, putative / 0.685
4rx6 ATPNitrogen regulatory PII-like protein / 0.677
3mhy ATPNitrogen regulatory protein P-II 1 / 0.665
4fak SAMRibosomal RNA large subunit methyltransferase H / 0.662
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.660
3dkv AP5Adenylate kinase / 0.656
3eps ATPIsocitrate dehydrogenase kinase/phosphatase / 0.654
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.652
4kgn SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.650