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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ofu DHT Androgen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ofu DHTAndrogen receptor / 1.196
1t63 DHTAndrogen receptor / 1.122
1t7f DHTAndrogen receptor / 1.121
1t7m DHTAndrogen receptor / 1.111
1t7t DHTAndrogen receptor / 1.109
2piv DHTAndrogen receptor / 1.104
2z4j DHTAndrogen receptor / 1.068
1t5z DHTAndrogen receptor / 1.054
2pir DHTAndrogen receptor / 1.053
1t76 DHTAndrogen receptor / 1.050
4oed DHTAndrogen receptor / 1.043
2pkl DHTAndrogen receptor / 1.012
2pix DHTAndrogen receptor / 1.006
2q7j TESAndrogen receptor / 0.987
2q7l TESAndrogen receptor / 0.965
2am9 TESAndrogen receptor / 0.953
2ylq TESAndrogen receptor / 0.945
4oey DHTAndrogen receptor / 0.876
4oea DHTAndrogen receptor / 0.847
4ofr DHTAndrogen receptor / 0.832
2amb 17HAndrogen receptor / 0.828
2pit DHTAndrogen receptor / 0.827
2pio DHTAndrogen receptor / 0.826
2ama DHTAndrogen receptor / 0.816
1t74 DHTAndrogen receptor / 0.798
1t79 DHTAndrogen receptor / 0.798
1t65 DHTAndrogen receptor / 0.793
1t73 DHTAndrogen receptor / 0.793
4k7a DHTAndrogen receptor / 0.793
2q7i TESAndrogen receptor / 0.787
1t7r DHTAndrogen receptor / 0.784
2ao6 R18Androgen receptor / 0.778
1xow R18Androgen receptor / 0.777
2piw DHTAndrogen receptor / 0.773
2q7k TESAndrogen receptor / 0.773
2piq DHTAndrogen receptor / 0.768
1xj7 DHTAndrogen receptor / 0.767
2ylp TESAndrogen receptor / 0.767
1xq3 R18Androgen receptor / 0.765
2pip DHTAndrogen receptor / 0.765
4e5l DBHPolymerase acidic protein / 0.760
2piu DHTAndrogen receptor / 0.757
4oez DHTAndrogen receptor / 0.754
1e3k R18Progesterone receptor / 0.733
2p15 EZTEstrogen receptor / 0.725
4hlw TESAndrogen receptor / 0.724
1lho AOMSex hormone-binding globulin / 0.706
3zqt TESAndrogen receptor / 0.705
5hyr ESTEstrogen receptor / 0.705
1y5r C0RCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.701
1coy ANDCholesterol oxidase 1.1.3.6 0.697
1lri CLRBeta-elicitin cryptogein / 0.696
3g1r FIT3-oxo-5-beta-steroid 4-dehydrogenase / 0.696
3nhx ASDSteroid Delta-isomerase 5.3.3.1 0.693
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.680
2d09 FLVBiflaviolin synthase CYP158A2 / 0.679
2ylo TESAndrogen receptor / 0.676
4a2j AS0Progesterone receptor / 0.675
2qpy DHTAndrogen receptor / 0.673
3uzx AOX3-oxo-5-beta-steroid 4-dehydrogenase / 0.671
5dx3 ESTEstrogen receptor / 0.671
1lhn AONSex hormone-binding globulin / 0.668
4pxm ESTEstrogen receptor / 0.668
4at2 ASDPossible succinate dehydrogenase / 0.667
5dxg ESTEstrogen receptor / 0.667
2ft9 CHDFatty acid-binding protein 2, liver / 0.665
3w5t LHPVitamin D3 receptor / 0.664
4e5f 0N7Polymerase acidic protein / 0.660
2mm3 GCHGastrotropin / 0.657
1o1v TCHGastrotropin / 0.655
3w1w CHDFerrochelatase, mitochondrial 4.99.1.1 0.655
3cmf PDN3-oxo-5-beta-steroid 4-dehydrogenase / 0.653
3uzx AOM3-oxo-5-beta-steroid 4-dehydrogenase / 0.653
2yja ESTEstrogen receptor / 0.652
2qgt EEDEstrogen receptor / 0.650