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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4n1f CZH Obelin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4n1f CZHObelin / 1.192
1qv0 CZHObelin / 1.100
1sl9 CZHObelin / 1.073
1el4 CTZObelin / 1.042
4mrx CZHObelin / 1.016
1jf2 CZHObelin / 1.006
1jf0 CZHObelin / 0.952
4nqg CZHMitrocomin / 0.933
1ej3 CZHAequorin-2 / 0.923
1qv1 CZHObelin / 0.842
1uhj CZBAequorin-2 / 0.838
1s36 CEIObelin / 0.747
1uhh CZPAequorin-2 / 0.663
4e5l DBHPolymerase acidic protein / 0.651