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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4m63 ATP Actin-5C

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4m63 ATPActin-5C / 1.039
3mn6 ATPActin-5C / 0.920
3mn9 ATPActin-5C / 0.890
2q97 ATPActin, alpha skeletal muscle / 0.888
4pkg ATPActin, alpha skeletal muscle / 0.883
3eks ATPActin-5C / 0.879
3mn7 ATPActin-5C / 0.878
1wua ATPActin, alpha skeletal muscle / 0.876
1kxp ATPActin, alpha skeletal muscle / 0.875
1c0f ATPMajor actin / 0.873
1t44 ATPActin, alpha skeletal muscle / 0.869
3m6g ATPActin, alpha skeletal muscle / 0.868
4b1v ATPActin, alpha skeletal muscle / 0.867
3eku ATPActin-5C / 0.855
2p9k ATPActin-related protein 2 / 0.852
1qz5 ATPActin, alpha skeletal muscle / 0.851
2q36 ATPActin, alpha skeletal muscle / 0.848
3a5o ATPMajor actin / 0.845
1mdu ATPActin, alpha skeletal muscle / 0.836
1s22 ATPActin, alpha skeletal muscle / 0.832
2a41 ATPActin, alpha skeletal muscle / 0.830
4k41 ATPActin, alpha skeletal muscle / 0.829
5ce3 ATPActin / 0.828
3chw ATPMajor actin / 0.825
2v51 ATPActin, alpha skeletal muscle / 0.823
3el2 ATPActin-5C / 0.822
4pl8 ATPActin, alpha skeletal muscle / 0.822
3m1f ATPActin, alpha skeletal muscle / 0.821
4pkh ADPActin, alpha skeletal muscle / 0.809
1lot ATPActin, alpha skeletal muscle / 0.807
1eqy ATPActin, alpha skeletal muscle / 0.806
1dej ATPMajor actin / 0.801
2oan ATPActin, cytoplasmic 1 / 0.799
3tu5 ATPActin, alpha skeletal muscle / 0.796
4cbx ATPActin-2 / 0.795
1ijj ATPActin, alpha skeletal muscle / 0.787
3daw ATPActin, alpha skeletal muscle / 0.787
4pki ATPActin, alpha skeletal muscle / 0.786
3w3d ATPActin, gamma-enteric smooth muscle / 0.785
1rgi ATPActin, alpha skeletal muscle / 0.759
1nlv ATPMajor actin / 0.754
1yxq ATPActin, alpha skeletal muscle / 0.754
4ci6 ATPActin / 0.749
4k42 ADPActin, alpha skeletal muscle / 0.747
3d2e ATPHeat shock protein homolog SSE1 / 0.737
4jhd ANPActin-5C / 0.736
3a5m ATPMajor actin / 0.734
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.731
3ffk ATPActin, alpha skeletal muscle / 0.726
1nmd ATPMajor actin / 0.718
3wt0 ATPCell division protein FtsA / 0.714
1nm1 ATPMajor actin / 0.712
1h1v ATPActin, alpha skeletal muscle / 0.711
2e2q ADPATP-dependent hexokinase / 0.711
4k43 ADPActin, alpha skeletal muscle / 0.708
4b9q ATPChaperone protein DnaK / 0.699
1rfq ATPActin, alpha skeletal muscle / 0.691
2zgy GDPPlasmid segregation protein ParM / 0.677
1mwm ADPPlasmid segregation protein ParM / 0.671
4a62 ANPPlasmid segregation protein ParM / 0.667
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.666
1rqj IPEFarnesyl diphosphate synthase 2.5.1.10 0.664
3ule ATPActin-related protein 2 / 0.659