Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4m2b UPG UDP-glucose pyrophosphorylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4m2b UPGUDP-glucose pyrophosphorylase / 1.376
4m2a UPGUDP-glucose pyrophosphorylase / 1.178
2oeg UPGUDP-glucose pyrophosphorylase / 1.170
3gue UPGUTP-glucose-1-phosphate uridylyltransferase 2, putative / 1.122
4g3p UD1Bifunctional protein GlmU / 0.808
4g3q UD1Bifunctional protein GlmU / 0.791
2icy UPGUTP--glucose-1-phosphate uridylyltransferase 2 2.7.7.9 0.787
4g3s UD1Bifunctional protein GlmU / 0.769
3dj4 UD1Bifunctional protein GlmU / 0.760
2oi6 UD1Bifunctional protein GlmU / 0.740
2icx UTPUTP--glucose-1-phosphate uridylyltransferase 2 2.7.7.9 0.728
1fwy UD1Bifunctional protein GlmU / 0.718
2yqj UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.706
3juk UPGUTP--glucose-1-phosphate uridylyltransferase / 0.697
2x5z GDDMannose-1-phosphate guanylyltransferase / 0.683
2yqs UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.683
1g1l DAUGlucose-1-phosphate thymidylyltransferase / 0.682
2qrq S13Glycogen phosphorylase, muscle form 2.4.1.1 0.672
4ho6 UTPGlucose-1-phosphate thymidylyltransferase / 0.670
2fgk ATPAlpha-hemolysin translocation ATP-binding protein HlyB / 0.666
1h5t DAUGlucose-1-phosphate thymidylyltransferase 1 / 0.662
3g2h KOTGlycogen phosphorylase, muscle form 2.4.1.1 0.654
4el5 D1MGlycogen phosphorylase, muscle form 2.4.1.1 0.653