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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4m2a UPG UDP-glucose pyrophosphorylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4m2a UPGUDP-glucose pyrophosphorylase / 1.312
2oeg UPGUDP-glucose pyrophosphorylase / 1.216
4m2b UPGUDP-glucose pyrophosphorylase / 1.178
3gue UPGUTP-glucose-1-phosphate uridylyltransferase 2, putative / 1.088
2icy UPGUTP--glucose-1-phosphate uridylyltransferase 2 2.7.7.9 0.818
2yqj UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.791
3spt UD1Bifunctional protein GlmU / 0.778
1fwy UD1Bifunctional protein GlmU / 0.770
4g3p UD1Bifunctional protein GlmU / 0.767
1jvd UD1UDP-N-acetylhexosamine pyrophosphorylase 2.7.7.23 0.765
2oi6 UD1Bifunctional protein GlmU / 0.763
3dj4 UD1Bifunctional protein GlmU / 0.761
1hv9 UD1Bifunctional protein GlmU / 0.751
2yqs UD1UDP-N-acetylglucosamine pyrophosphorylase 2.7.7.23 0.737
2icx UTPUTP--glucose-1-phosphate uridylyltransferase 2 2.7.7.9 0.684
2qrq S13Glycogen phosphorylase, muscle form 2.4.1.1 0.665
5ief NBVNeutral alpha-glucosidase AB 3.2.1.84 0.664
2oww G4D4-alpha-glucanotransferase 2.4.1.25 0.659