Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4lyn 1YG Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.948
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.786
3igg EFQCyclin-dependent kinase 2 2.7.11.22 0.772
4fki 09KCyclin-dependent kinase 2 2.7.11.22 0.765
2a0c CK9Cyclin-dependent kinase 2 2.7.11.22 0.760
2btr U73Cyclin-dependent kinase 2 2.7.11.22 0.758
4e5i 0N9Polymerase acidic protein / 0.744
3dog NNNCyclin-dependent kinase 2 2.7.11.22 0.737
3pj8 404Cyclin-dependent kinase 2 2.7.11.22 0.733
2r64 740Cyclin-dependent kinase 2 2.7.11.22 0.718
1gih 1PUCyclin-dependent kinase 2 2.7.11.22 0.709
1vyz N5BCyclin-dependent kinase 2 2.7.11.22 0.706
3lfs A07Cyclin-dependent kinase 2 2.7.11.22 0.699
2a4l RRCCyclin-dependent kinase 2 2.7.11.22 0.698
1gii 1PUCyclin-dependent kinase 2 2.7.11.22 0.690
3ddq RRCCyclin-dependent kinase 2 2.7.11.22 0.686
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.682
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.679
4fkw 62KCyclin-dependent kinase 2 2.7.11.22 0.674
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.673
4fkv 61KCyclin-dependent kinase 2 2.7.11.22 0.673
1vyw 292Cyclin-dependent kinase 2 2.7.11.22 0.672
3ggf GVDSerine/threonine-protein kinase 26 / 0.671
3qtq X35Cyclin-dependent kinase 2 2.7.11.22 0.671
4bgq 38RCyclin-dependent kinase-like 5 2.7.11.22 0.671
2r3m SCXCyclin-dependent kinase 2 2.7.11.22 0.670
1y91 CT9Cyclin-dependent kinase 2 2.7.11.22 0.666
3ezv EZVCyclin-dependent kinase 2 2.7.11.22 0.664
2b54 D05Cyclin-dependent kinase 2 2.7.11.22 0.663
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.663
1ke6 LS2Cyclin-dependent kinase 2 2.7.11.22 0.662
3uli 1N3Cyclin-dependent kinase 2 2.7.11.22 0.661
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.660
4e5f 0N7Polymerase acidic protein / 0.660
1gij 2PUCyclin-dependent kinase 2 2.7.11.22 0.659
1ckp PVBCyclin-dependent kinase 2 2.7.11.22 0.658
2vtj LZ4Cyclin-dependent kinase 2 2.7.11.22 0.658
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.658
2r3r 6SCCyclin-dependent kinase 2 2.7.11.22 0.655
3r28 XA0Cyclin-dependent kinase 2 2.7.11.22 0.655
3qtz X42Cyclin-dependent kinase 2 2.7.11.22 0.651
3rkb 12ZCyclin-dependent kinase 2 2.7.11.22 0.650