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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4lt6 3AT Poly(A) polymerase gamma 2.7.7.19

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4lt6 3ATPoly(A) polymerase gamma 2.7.7.19 0.909
2q66 ATPPoly(A) polymerase 2.7.7.19 0.709
4xj4 3ATCyclic GMP-AMP synthase / 0.679
1r8b ATPCCA-adding enzyme 2.7.7.72 0.668
1r89 CTPCCA-adding enzyme 2.7.7.72 0.665
3er9 3ATPoly(A) polymerase catalytic subunit 2.7.7.19 0.665
2ikf UTPPoly(A) polymerase, putative / 0.660
4fjm DCPDNA-directed DNA polymerase / 0.656
4fjh DGTDNA-directed DNA polymerase / 0.655
4m3x ATPDNA-directed DNA polymerase / 0.651
4m3t ATPDNA-directed DNA polymerase / 0.650