Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4knn E1F Carbonic anhydrase 13 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4knn E1FCarbonic anhydrase 13 4.2.1.1 1.033
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.801
3sax E50Carbonic anhydrase 2 4.2.1.1 0.787
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.762
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.760
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.759
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.752
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.739
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.737
3myq E27Carbonic anhydrase 2 4.2.1.1 0.737
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.729
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.724
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.690
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.688
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.684
1okl MNSCarbonic anhydrase 2 4.2.1.1 0.682
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.675
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.675
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.663
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.661
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.661
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.656
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.656
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.656
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.655
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.652
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.651
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.650