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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4k5o 1OT M1 family aminopeptidase 3.4.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4k5o 1OTM1 family aminopeptidase 3.4.11 0.944
4k5p 1OSM1 family aminopeptidase 3.4.11 0.869
2zxg S23Aminopeptidase N 3.4.11.2 0.799
3q44 D50M1 family aminopeptidase 3.4.11 0.779
4jbs P52Endoplasmic reticulum aminopeptidase 2 3.4.11 0.777
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3ebi BEYM1 family aminopeptidase 3.4.11 0.739
4pu2 PLUAminopeptidase N / 0.734
2r59 PH0Leukotriene A-4 hydrolase 3.3.2.6 0.726
3q43 D66M1 family aminopeptidase 3.4.11 0.713
2dqm BESAminopeptidase N 3.4.11.2 0.711
4xmx BESAminopeptidase N 3.4.11.2 0.680
3chs 4BULeukotriene A-4 hydrolase 3.3.2.6 0.679
3fuf BESLeukotriene A-4 hydrolase 3.3.2.6 0.661
2yd0 BESEndoplasmic reticulum aminopeptidase 1 3.4.11 0.660
3fuh BESLeukotriene A-4 hydrolase 3.3.2.6 0.655