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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jzy FAD Cryptochrome-1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jzy FADCryptochrome-1 / 1.312
4gu5 FADCryptochrome-1 / 1.196
2wq7 FADRE11660p / 0.993
3cvu FADRE11660p / 0.983
2wq6 FADRE11660p / 0.971
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 0.969
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.937
1np7 FADCryptochrome DASH / 0.926
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.925
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.921
3cvy FADRE11660p / 0.910
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.878
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 0.876
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.866
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.848
2wb2 FADRE11660p / 0.847
1u3c FADCryptochrome-1 / 0.845
1u3d FADCryptochrome-1 / 0.824
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.821
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.817
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.794
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.782
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.780
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.779
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.774
4dja FAD(6-4) photolyase / 0.760
4i6g FADCryptochrome-2 / 0.750
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.729
4yco FMNtRNA-dihydrouridine(16) synthase / 0.683
4cdm FADDeoxyribodipyrimidine photolyase / 0.682
1nb9 RBFRiboflavin kinase 2.7.1.26 0.657
3umv FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.654
3gfz FMNUncharacterized protein / 0.652
3otx AP5Adenosine kinase, putative / 0.650