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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jxz ATP Glutamine--tRNA ligase 6.1.1.18

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jxz ATPGlutamine--tRNA ligase 6.1.1.18 0.969
4jxx ATPGlutamine--tRNA ligase 6.1.1.18 0.885
1gtr ATPGlutamine--tRNA ligase 6.1.1.18 0.766
1qru ATPGlutamine--tRNA ligase 6.1.1.18 0.766
4jyz ATPGlutamine--tRNA ligase 6.1.1.18 0.750
1qrs ATPGlutamine--tRNA ligase 6.1.1.18 0.744
1qtq QSIGlutamine--tRNA ligase 6.1.1.18 0.734
1euy QSIGlutamine--tRNA ligase 6.1.1.18 0.727
2rd2 QSIGlutamine--tRNA ligase 6.1.1.18 0.715
1qrt ATPGlutamine--tRNA ligase 6.1.1.18 0.714
2re8 GSUGlutamine--tRNA ligase 6.1.1.18 0.710
1ad5 ANPTyrosine-protein kinase HCK 2.7.10.2 0.663