Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
PDB ID | HET | Uniprot Name | EC Number |
---|---|---|---|
4jp9 | 1M5 | Beta-secretase 1 | 3.4.23.46 |
PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
---|---|---|---|---|---|
4jp9 | 1M5 | Beta-secretase 1 | 3.4.23.46 | 0.928 | |
4jpc | 1M6 | Beta-secretase 1 | 3.4.23.46 | 0.870 | |
4joo | 1M4 | Beta-secretase 1 | 3.4.23.46 | 0.844 | |
4djv | 0KM | Beta-secretase 1 | 3.4.23.46 | 0.742 | |
4jpe | 1M7 | Beta-secretase 1 | 3.4.23.46 | 0.736 | |
4b05 | 32D | Beta-secretase 1 | 3.4.23.46 | 0.735 | |
4djy | 0KR | Beta-secretase 1 | 3.4.23.46 | 0.735 | |
4b0q | GMF | Beta-secretase 1 | 3.4.23.46 | 0.728 | |
4b72 | 2FB | Beta-secretase 1 | 3.4.23.46 | 0.727 | |
4dju | 0KK | Beta-secretase 1 | 3.4.23.46 | 0.719 | |
4azy | 7F3 | Beta-secretase 1 | 3.4.23.46 | 0.703 | |
4acx | S8Z | Beta-secretase 1 | 3.4.23.46 | 0.695 | |
4djw | 0KP | Beta-secretase 1 | 3.4.23.46 | 0.692 | |
4djx | 0KQ | Beta-secretase 1 | 3.4.23.46 | 0.692 | |
1vaf | ARR | Nitric oxide synthase, inducible | 1.14.13.39 | 0.665 | |
4b1c | 1B1 | Beta-secretase 1 | 3.4.23.46 | 0.663 | |
4b77 | 54M | Beta-secretase 1 | 3.4.23.46 | 0.659 | |
4b78 | KGG | Beta-secretase 1 | 3.4.23.46 | 0.655 |