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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jla ADP Adenylate kinase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jla ADPAdenylate kinase / 1.189
4jlb ADPAdenylate kinase / 1.002
4x8l AP5Adenylate kinase / 0.817
4jlp ADPAdenylate kinase / 0.816
4jl8 ADPAdenylate kinase / 0.805
4qbg AP5Adenylate kinase / 0.803
4x8o AP5Adenylate kinase / 0.781
4qbh AP5Adenylate kinase / 0.777
4mkg AP5Adenylate kinase / 0.755
4qbf AP5Adenylate kinase / 0.750
3dkv AP5Adenylate kinase / 0.745
2oo7 AP5Adenylate kinase / 0.731
2aky AP5Adenylate kinase / 0.727
3hpq AP5Adenylate kinase / 0.720
3dl0 AP5Adenylate kinase / 0.705
1zio AP5Adenylate kinase / 0.701
1e4y AP5Adenylate kinase / 0.676
4mkh AP5Adenylate kinase / 0.674
1uda UFGUDP-glucose 4-epimerase 5.1.3.2 0.673
4tyq AP5Adenylate kinase / 0.660
1a9z UPGUDP-glucose 4-epimerase 5.1.3.2 0.659
2eu8 AP5Adenylate kinase / 0.653
3hyo ADPPyridoxal kinase / 0.650