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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jhd ANP Actin-5C

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jhd ANPActin-5C / 1.082
1yxq ATPActin, alpha skeletal muscle / 0.939
3a5m ATPMajor actin / 0.862
2a41 ATPActin, alpha skeletal muscle / 0.851
2v51 ATPActin, alpha skeletal muscle / 0.830
4b1v ATPActin, alpha skeletal muscle / 0.806
3a5o ATPMajor actin / 0.794
3wt0 ATPCell division protein FtsA / 0.794
1kxp ATPActin, alpha skeletal muscle / 0.786
1wua ATPActin, alpha skeletal muscle / 0.770
1mdu ATPActin, alpha skeletal muscle / 0.762
3mn7 ATPActin-5C / 0.761
3m6g ATPActin, alpha skeletal muscle / 0.759
1nm1 ATPMajor actin / 0.758
3chw ATPMajor actin / 0.757
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.748
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.748
1t44 ATPActin, alpha skeletal muscle / 0.745
3w3d ATPActin, gamma-enteric smooth muscle / 0.745
5ce3 ATPActin / 0.743
2q97 ATPActin, alpha skeletal muscle / 0.742
1atn ATPActin, alpha skeletal muscle / 0.737
2q36 ATPActin, alpha skeletal muscle / 0.737
3mn6 ATPActin-5C / 0.736
4k41 ATPActin, alpha skeletal muscle / 0.736
4m63 ATPActin-5C / 0.736
4cbx ATPActin-2 / 0.733
3daw ATPActin, alpha skeletal muscle / 0.732
1c0f ATPMajor actin / 0.730
1nmd ATPMajor actin / 0.728
4pki ATPActin, alpha skeletal muscle / 0.727
1s22 ATPActin, alpha skeletal muscle / 0.726
4ci6 ATPActin / 0.726
4pl8 ATPActin, alpha skeletal muscle / 0.725
3el2 ATPActin-5C / 0.721
3wqt ANPCell division protein FtsA / 0.718
2e2q ADPATP-dependent hexokinase / 0.717
3eku ATPActin-5C / 0.716
1dej ATPMajor actin / 0.712
2oan ATPActin, cytoplasmic 1 / 0.709
3m1f ATPActin, alpha skeletal muscle / 0.709
1nlv ATPMajor actin / 0.708
1eqy ATPActin, alpha skeletal muscle / 0.706
4k42 ADPActin, alpha skeletal muscle / 0.703
3eks ATPActin-5C / 0.701
4pkh ADPActin, alpha skeletal muscle / 0.701
3ule ATPActin-related protein 2 / 0.698
1qz5 ATPActin, alpha skeletal muscle / 0.697
2fsn ADPArchaeal actin homolog / 0.696
4a61 ANPPlasmid segregation protein ParM / 0.695
4brd ANPEctonucleoside triphosphate diphosphohydrolase I / 0.695
4pkg ATPActin, alpha skeletal muscle / 0.695
3ffk ATPActin, alpha skeletal muscle / 0.694
3tu5 ATPActin, alpha skeletal muscle / 0.691
4brg GNPEctonucleoside triphosphate diphosphohydrolase I / 0.691
1ijj ATPActin, alpha skeletal muscle / 0.690
3mn9 ATPActin-5C / 0.687
4a62 ANPPlasmid segregation protein ParM / 0.681
1rfq ATPActin, alpha skeletal muscle / 0.677
2p9k ATPActin-related protein 2 / 0.666
3wqu ATPCell division protein FtsA / 0.666
2zgz GNPPlasmid segregation protein ParM / 0.664
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.660
2d0o ADPDiol dehydratase-reactivating factor alpha subunit / 0.659
3d2e ATPHeat shock protein homolog SSE1 / 0.659
4bri UNPEctonucleoside triphosphate diphosphohydrolase I / 0.653
1rgi ATPActin, alpha skeletal muscle / 0.652
4rwt ANPActin-5C / 0.652
1h1v ATPActin, alpha skeletal muscle / 0.650