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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4jbs P52 Endoplasmic reticulum aminopeptidase 2 3.4.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4jbs P52Endoplasmic reticulum aminopeptidase 2 3.4.11 1.064
2zxg S23Aminopeptidase N 3.4.11.2 0.788
4k5o 1OTM1 family aminopeptidase 3.4.11 0.777
2hpt BESAminopeptidase N 3.4.11.2 0.772
2dqm BESAminopeptidase N 3.4.11.2 0.771
3q44 D50M1 family aminopeptidase 3.4.11 0.764
3ebi BEYM1 family aminopeptidase 3.4.11 0.760
3q43 D66M1 family aminopeptidase 3.4.11 0.752
4xmx BESAminopeptidase N 3.4.11.2 0.748
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2yd0 BESEndoplasmic reticulum aminopeptidase 1 3.4.11 0.724
2r59 PH0Leukotriene A-4 hydrolase 3.3.2.6 0.709
4k5p 1OSM1 family aminopeptidase 3.4.11 0.689
4fkk BESAminopeptidase N 3.4.11.2 0.683
2xq0 BESLeukotriene A-4 hydrolase homolog 3.3.2.6 0.669
3fuf BESLeukotriene A-4 hydrolase 3.3.2.6 0.669
3fuh BESLeukotriene A-4 hydrolase 3.3.2.6 0.667
3ftx BESLeukotriene A-4 hydrolase 3.3.2.6 0.653
3fu5 492Leukotriene A-4 hydrolase 3.3.2.6 0.652