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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4ja1 NGH Stromelysin-1 3.4.24.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4ja1 NGHStromelysin-1 3.4.24.17 1.005
4dpe NGHStromelysin-1 3.4.24.17 0.953
1d8m BBHStromelysin-1 3.4.24.17 0.840
1bqo N25Stromelysin-1 3.4.24.17 0.830
1g05 BBHStromelysin-1 3.4.24.17 0.823
1d7x SPCStromelysin-1 3.4.24.17 0.816
2w0d CGSMacrophage metalloelastase 3.4.24.65 0.801
4h76 10BMacrophage metalloelastase 3.4.24.65 0.791
3oho Z79Stromelysin-1 3.4.24.17 0.787
3kry 3KRCollagenase 3 3.4.24 0.776
1d8f SPIStromelysin-1 3.4.24.17 0.773
2d1o FA4Stromelysin-1 3.4.24.17 0.761
1zxc IH6Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.756
3o2x 3O2Collagenase 3 3.4.24 0.756
2i47 KGYDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.750
3zxh E41Collagenase 3 3.4.24 0.744
4h49 L29Macrophage metalloelastase 3.4.24.65 0.738
1b3d S27Stromelysin-1 3.4.24.17 0.737
1bzs BSINeutrophil collagenase 3.4.24.34 0.723
1d5j MM3Stromelysin-1 3.4.24.17 0.722
4guy KLJMacrophage metalloelastase 3.4.24.65 0.708
1ciz DPSStromelysin-1 3.4.24.17 0.703
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.701
2ovx 4MRMatrix metalloproteinase-9 3.4.24.35 0.695
4a7b 3W4Collagenase 3 3.4.24 0.680
4g9l NGHStromelysin-1 3.4.24.17 0.669
2woa 576Macrophage metalloelastase 3.4.24.65 0.666
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.665
1g49 111Stromelysin-1 3.4.24.17 0.651