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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4j99 ACP Fibroblast growth factor receptor 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4j99 ACPFibroblast growth factor receptor 2 / 0.802
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.684
4ckj ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.683
2vcz VC3Hematopoietic prostaglandin D synthase / 0.672
4j95 ACPFibroblast growth factor receptor 2 / 0.666
1h1p CMGCyclin-dependent kinase 2 2.7.11.22 0.658
2whq HI6Acetylcholinesterase 3.1.1.7 0.658
3lzz GDPUncharacterized protein / 0.657
4dt8 ADNAPH(2'')-Id / 0.657
4pah LNRPhenylalanine-4-hydroxylase 1.14.16.1 0.655
2yeg XQGHeat shock protein HSP 90-alpha / 0.654
4fic 0ULProto-oncogene tyrosine-protein kinase Src 2.7.10.2 0.651