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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4j75 TYM Tryptophan--tRNA ligase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4j75 TYMTryptophan--tRNA ligase / 1.298
1r6t TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.946
3kt3 TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.916
3jxe TYMTryptophan--tRNA ligase / 0.835
2quj TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.832
1r6u TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.792
3kt8 LTNTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.792
1i6l TYMTryptophan--tRNA ligase 6.1.1.2 0.705
3ag6 PAJPantothenate synthetase / 0.682
1n2i PAJPantothenate synthetase 6.3.2.1 0.663
2qtr NXXProbable nicotinate-nucleotide adenylyltransferase / 0.655
1i6k TYMTryptophan--tRNA ligase 6.1.1.2 0.654
3iob A4DPantothenate synthetase 6.3.2.1 0.654