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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
4iif CTS Beta-glucosidase 1 3.2.1.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
4iif CTSBeta-glucosidase 1 3.2.1.21 0.999
4azh LOGBeta-N-acetylhexosaminidase 3.2.1.52 0.713
2j7c IDEBeta-glucosidase A 3.2.1.21 0.702
2j7d GI1Beta-glucosidase A 3.2.1.21 0.692
4eke D1IGlycogen phosphorylase, muscle form 2.4.1.1 0.671
1k08 BZDGlycogen phosphorylase, muscle form 2.4.1.1 0.667
2oyl IDCEndoglycoceramidase II / 0.660
2qn7 HBZGlycogen phosphorylase, muscle form 2.4.1.1 0.658
5c1h GDUHisto-blood group ABO system transferase / 0.658